Stem-loop bmo-mir-3220

Accession

MI0014273

Description

Bombyx mori bmo-mir-3220 precursor miRNA

Literature search

1 open access papers mention bmo-mir-3220
(2 sentences)

Sequence

1153 reads, 41.0 reads per million, 21 experiments

gcguUUCUUUCCGCGCGUGACGGUUUGGAACccaucggagguuccggguucggggcUGGCGGCCGACUCGAACUCCAUC
..((((...((.((.(((..((((((.((((((...(((...))))))))).))))))))))).))...))))......

Structure

----gc    CUU  C  G   GA      G      auc   g 
      guUU   UC GC CGU  CGGUUU GAACcc   gga  
      ||||   || || |||  |||||| ||||||   ||| g
      CAAG   AG CG GCG  GUcggg cuuggg   ccu  
CUACCU    CUC  C  -   --      g      ---   u 

Annotation confidence Low

Genome context

dbj|BSVE01000024.1|: 12917571-12917649 [-]

Mature bmo-miR-3220-5p

• Accession: MIMAT0015400
• Description: Bombyx mori bmo-miR-3220-5p mature miRNA
• Sequence: 5 - UUCUUUCCGCGCGUGACGGUUUGGAAC - 31
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3220-3p

• Accession: MIMAT0053225
• Description: Bombyx mori bmo-miR-3220-3p mature miRNA
• Sequence: 57 - UGGCGGCCGACUCGAACUCCAUC - 79
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415