miRBase entry: bmo-mir-3223

Stem-loop bmo-mir-3223


Accession
MI0014276
Description
Bombyx mori bmo-mir-3223 precursor miRNA


Sequence

reads, None reads per million, experiments
acuuuUACCUUUUACCUUUACCACAGAcacuuguaccuuuucuaagcccuaauuggcugggagagagguugaccuggCUCUCUGGGGAGGAUAAUUUGgugc
.....((((..((((((((.(((.(((..(..(((((((((((.((((......)))).))).))))))..))..)..))).)))))))).)))...)))).

Structure
acuuu    -UU   -     A   C   ca uu  --      -   a    cu 
     UACC   UUA CCUUU CCA AGA  c  gu  accuuu ucu agcc  a
     ||||   ||| ||||| ||| |||  |  ||  |||||| ||| ||||   
     gugG   AAU GGAGG GGU UCU  g  ca  uggaga agg ucgg  a
----c    UUU   A     -   C   Cg uc  gu      g   g    uu 


Annotation confidence Not enough data
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Genome context
NW_004582459.1: 2677-2778 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3223
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3223-5p

Accession MIMAT0015403
Description Bombyx mori bmo-miR-3223-5p mature miRNA
Sequence 6 - UACCUUUUACCUUUACCACAGA - 27
Evidence experimental
SOLID [1]

Mature bmo-miR-3223-3p

Accession MIMAT0015404
Description Bombyx mori bmo-miR-3223-3p mature miRNA
Sequence 78 - CUCUCUGGGGAGGAUAAUUUG - 98
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415