miRBase entry: bmo-mir-3227

Stem-loop bmo-mir-3227


Accession
MI0014281
Description
Bombyx mori bmo-mir-3227 precursor miRNA


Sequence

4 reads, 1.0 reads per million, 2 experiments
uaaaaucuggcaaaauaauauagucauUAGCAAUUUUUCAGGACGCUCGGaccccaaagacgucaucaguguguuuagugugaguuaacguaaaaguuaaugcuuuguauggaauuguaacguuugccuaaguuugc
........(((((((((((.((..((..((((((((((..(...(((((.((...(((.(((.(....)))).))).)).)))))...)..))))))...)))).))..))..)))))....)))))).........

Structure
-uaaaaucu      ----     -a  gu  uU    ---      CA GAC     G  ccc   g   u a 
         ggcaaa    auaau  ua  ca  AGCA   AUUUUU  G   GCUCG ac   aaa acg c u
         ||||||    |||||  ||  ||  ||||   ||||||  |   ||||| ||   ||| ||| |  
         ccguuu    uguua  gu  gu  ucgu   ugaaaa  c   ugagu ug   uuu ugu g c
cguuugaau      gcaa     ag  au  -u    aau      ug aau     g  --a   g   - a 


Annotation confidence Not enough data
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Genome context
dbj|BSVE01000018.1|: 12495922-12496058 [-]

Database links

Mature bmo-miR-3227-5p

Accession MIMAT0015409
Description Bombyx mori bmo-miR-3227-5p mature miRNA
Sequence 28 - UAGCAAUUUUUCAGGACGCUCGG - 50
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415