Stem-loop bmo-mir-3228

Accession

MI0014282

Description

Bombyx mori bmo-mir-3228 precursor miRNA

Literature search

1 open access papers mention bmo-mir-3228
(1 sentences)

Sequence

3428 reads, 82.0 reads per million, 29 experiments

uauuugagcaccuUGAGAUCAAAUGUUGCUGUCCUUGGAUcuugaaguucugaauuuucaagaucuucagauucguggcuucgagcugUCAUUACUUGAGAUGGAGGAAUCU
.....((...((((.(..(((((((..(((..((.(((((((.((((.(((((....)).))).))))))))))).)).....)))...)))...))))..).))))..)).

Structure

uauuu  gca    G GA    ---   -UU   ---GU  U       u    u   -  a 
     ga   ccuU A  UCAA   AUG   GCU     CC UGGAUcu gaag ucu ga u
     ||   |||| |  ||||   |||   |||     || ||||||| |||| ||| ||  
     CU   GGAG U  AGUU   UAC   cga     gg gcuuaga cuuc aga cu u
----U  -AA    G AG    CAU   Ugu   gcuuc  u       -    u   a  u 

Annotation confidence Low

Genome context

dbj|BSVE01000009.1|: 5524717-5524828 [-]

Mature bmo-miR-3228-5p

• Accession: MIMAT0015410
• Description: Bombyx mori bmo-miR-3228-5p mature miRNA
• Sequence: 14 - UGAGAUCAAAUGUUGCUGUCCUUGGAU - 40
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3228-3p

• Accession: MIMAT0053227
• Description: Bombyx mori bmo-miR-3228-3p mature miRNA
• Sequence: 89 - UCAUUACUUGAGAUGGAGGAAUCU - 112
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415