miRBase entry: bmo-mir-3229

Stem-loop bmo-mir-3229


Accession
MI0014283
Description
Bombyx mori bmo-mir-3229 precursor miRNA


Sequence

28 reads, 7 reads per million, 3 experiments
uucaauuuuucguauuugccgguagcggguggauuuuuuaugauaucuuuaauuucgcggauguaccucuguuccagcugcgagauaaugugguaaaacuUUGUAGUAUCUUCCUUGAUACCGGAuauuuggaauugu
..(((((((..((((...((((((..(((.((((.((((((.((((.....(((((((((.((.((....))..)).))))))))).)))).)))))).........)))).)))...))))))))))..))))))).

Structure
uu       uc    uug      -gc   u    --------u      g    cuuua         a  -u  c 
  caauuuu  guau   ccggua   ggg ggau         uuuuau auau     auuucgcgg ug  ac u
  |||||||  ||||   ||||||   ||| ||||         |||||| ||||     ||||||||| ||  ||  
  guuaagg  uauA   GGCCAU   UCC UCUA         aaaaug ugua     uagagcguc ac  ug c
-u       uu    ---      AGU   U    UGAUGUUuc      g    ----a         g  cu  u 


Annotation confidence Not enough data
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Genome context
NW_004581785.1: 203938-204075 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3229
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3229

Accession MIMAT0015411
Description Bombyx mori bmo-miR-3229 mature miRNA
Sequence 101 - UUGUAGUAUCUUCCUUGAUACCGGA - 125
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415