Stem-loop bmo-mir-3229

Accession

MI0014283

Description

Bombyx mori bmo-mir-3229 precursor miRNA

Sequence

9523 reads, 172.0 reads per million, 34 experiments

uucaauuuuucguauuugccgguagcggguggauuuuuuaUGAUAUCUUUAAUUUCGCGGAUGUACCucuguuccagcugcgagauaaugugguaaaacuuuguaguaucuuccuUGAUACCGGAUAUUUGGAAUUGU
..(((((((..((((...((((((..(((.((((.((((((.((((.....(((((((((.((.((....))..)).))))))))).)))).)))))).........)))).)))...))))))))))..))))))).

Structure

uu       uc    uug      -gc   u    --------u      G    CUUUA         A  -U  C 
  caauuuu  guau   ccggua   ggg ggau         uuuuaU AUAU     AUUUCGCGG UG  AC u
  |||||||  ||||   ||||||   ||| ||||         |||||| ||||     ||||||||| ||  ||  
  GUUAAGG  UAUA   GGCCAU   ucc ucua         aaaaug ugua     uagagcguc ac  ug c
-U       UU    ---      AGU   u    ugauguuuc      g    ----a         g  cu  u 

Annotation confidence Low

Genome context

dbj|BSVE01000014.1|: 10579660-10579797 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-3229

Mature bmo-miR-3229-5p

• Accession: MIMAT0053228
• Description: Bombyx mori bmo-miR-3229-5p mature miRNA
• Sequence: 41 - UGAUAUCUUUAAUUUCGCGGAUGUACC - 67
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3229-3p

• Accession: MIMAT0015411
• Description: Bombyx mori bmo-miR-3229-3p mature miRNA
• Sequence: 116 - UGAUACCGGAUAUUUGGAAUUGU - 138
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415