Stem-loop bmo-mir-3242

Accession

MI0014297

Description

Bombyx mori bmo-mir-3242 precursor miRNA

Sequence

343 reads, 7.0 reads per million, 31 experiments

ccagaagucuuccauaaucauucuaguugcuucagggaaaccuuUGCCUUCAUCUUCUGCAACUUGUUGUAgaguucuUACAGCAAGGAACGGAGCCGAAGCAGUuccaaauguuacccaaagcaaucugaaaucuuugacuuua
...((((((...........(((..(((((((..(((.(((.((((.((((...(((((...((((((((((.....))))))))))...)))))..))))......)))).))).))).)))))))..)))......)))))).

Structure

cca      uuccauaauca   ua       ca   a   c    -----C    AUC     CAA          a 
   gaaguc           uuc  guugcuu  ggg aac uuUG      CUUC   UUCUG   CUUGUUGUAg g
   ||||||           |||  |||||||  ||| ||| ||||      ||||   |||||   |||||||||| u
   uuucag           aag  uaacgaa  ccc uug aaac      GAAG   GAGGC   GAACGACAUu u
--a      -----uuucua   uc       -a   a   u    cuUGAC    -CC     AAG          c 

Annotation confidence Medium

Genome context

dbj|BSVE01000014.1|: 7168472-7168616 [-]

Mature bmo-miR-3242-5p

• Accession: MIMAT0015424
• Description: Bombyx mori bmo-miR-3242-5p mature miRNA
• Sequence: 45 - UGCCUUCAUCUUCUGCAACUUGUUGUA - 71
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3242-3p

• Accession: MIMAT0053232
• Description: Bombyx mori bmo-miR-3242-3p mature miRNA
• Sequence: 79 - UACAGCAAGGAACGGAGCCGAAGCAGU - 105
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415