Stem-loop bmo-mir-3245

Accession

MI0014300

Description

Bombyx mori bmo-mir-3245 precursor miRNA

Literature search

1 open access papers mention bmo-mir-3245
(1 sentences)

Sequence

1133 reads, 23.0 reads per million, 31 experiments

gacgaagguguUGUUCCGUUGGUGAUGGUGAGUCCAGUccagucgcgggaagaaacacuuuuccacuuuugugucacuuugguUCACUAGUCACUUGGGAGACGUCCUGGga
.....(((((((.(((((..((((((((((((.((((....(.((((((((((.....)))))).....)))).)...))))))))))).)))))))))))))).)))....

Structure

gacga   -    G     UU     -       U    Ucca u    -----      a 
     agg uguU UUCCG  GGUGA UGGUGAG CCAG    g cgcg     ggaaga a
     ||| |||| |||||  ||||| ||||||| ||||    | ||||     |||||| c
     UCC GCAG AGGGU  UCACU AUCACUu gguu    c gugu     ccuuuu a
-agGG   U    -     --     G       -    -uca u    uuuca      c 

Annotation confidence Low

Genome context

dbj|BSVE01000014.1|: 2379321-2379432 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-3245

Mature bmo-miR-3245-5p

• Accession: MIMAT0053234
• Description: Bombyx mori bmo-miR-3245-5p mature miRNA
• Sequence: 12 - UGUUCCGUUGGUGAUGGUGAGUCCAGU - 38
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3245-3p

• Accession: MIMAT0015427
• Description: Bombyx mori bmo-miR-3245-3p mature miRNA
• Sequence: 84 - UCACUAGUCACUUGGGAGACGUCCUGG - 110
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415