Stem-loop bmo-mir-3301

Accession

MI0014358

Description

Bombyx mori bmo-mir-3301 precursor miRNA

Sequence

1416 reads, 28.0 reads per million, 34 experiments

uaaguauguguuucauuauaaauuucggugauaguaacccguUGAGUUUCUCGCCGGAUauuCUCAGUGGGUCGCGAUUCcaauccgauaguaaauucugcg
...(((.(.((((.(((((....((.((.(((.((.((((((((((..(.((....)).)..)))))))))).)).)))))))....))))))))).)))).

Structure

uaa   u u    c     aaau  c  u   a  a          UU C  G 
   gua g guuu auuau    uu gg gau gu acccguUGAG  U UC C
   ||| | |||| |||||    || || ||| || ||||||||||  | ||  
   cgu c uaaa ugaua    aa cC UUA CG UGGGUGACUC  a AG C
--g   - u    -     gccu  -  -   G  C          uu U  G 

Annotation confidence Low

Genome context

dbj|BSVE01000007.1|: 11338311-11338412 [-]

Mature bmo-miR-3301-5p

• Accession: MIMAT0053243
• Description: Bombyx mori bmo-miR-3301-5p mature miRNA
• Sequence: 63 - CUCAGUGGGUCGCGAUUC - 80
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3301-3p

• Accession: MIMAT0015489
• Description: Bombyx mori bmo-miR-3301-3p mature miRNA
• Sequence: 43 - UGAGUUUCUCGCCGGAU - 59
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415