miRBase entry: bmo-mir-3302

Stem-loop bmo-mir-3302


Accession
MI0014359
Description
Bombyx mori bmo-mir-3302 precursor miRNA


Sequence

3550 reads, 101.0 reads per million, 23 experiments
cuaauggugguguUACGAAUUUCAGUCUGAUUGCAAAGCCUguuacaugcuuccagauguacuugcgauaaaagucuggacaaucacagcaaccaguaauccagucGGUCUGAUUGUUUGGUAGUGUUA
...............(((((.((((.(((((((......(((.....(((((((((((...............))))))).......))))..))).....))))))).))))..))))).........

Structure
cuaauggugguguUA     -U    U       CAAAGC   uuaca    -------       guacuu 
               CGAAU  UCAG CUGAUUG      CUg     ugcu       uccagau      g
               |||||  |||| |||||||      |||     ||||       |||||||      c
               GUUUG  AGUC GGcugac      gac     acga       aggucug      g
------AUUGUGAUG     UU    U       -cuaau   ---ca    cacuaac       aaaaua 


Annotation confidence Low
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Genome context
dbj|BSVE01000024.1|: 13076215-13076343 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3302
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3302-5p

Accession MIMAT0015490
Description Bombyx mori bmo-miR-3302-5p mature miRNA
Sequence 14 - UACGAAUUUCAGUCUGAUUGCAAAGCCU - 41
Evidence experimental
SOLID [1]

Mature bmo-miR-3302-3p

Accession MIMAT0053244
Description Bombyx mori bmo-miR-3302-3p mature miRNA
Sequence 107 - GGUCUGAUUGUUUGGUAGUGUUA - 129
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415