miRBase entry: bmo-mir-3306

Stem-loop bmo-mir-3306


Accession
MI0014363
Description
Bombyx mori bmo-mir-3306 precursor miRNA


Sequence

5200 reads, 105.0 reads per million, 31 experiments
ggccgucgggauaggccgacauuauauauuuuuugauauuuuauuuuuauuuuaacaccuuauuauauucacaguuacaauuuuacacuaauguuauauauauaUAAUCGAUAGAUUUUGACGAGAGCua
((((((((((((....(((..((((((((....(((((((........(((.((((.................)))).)))........)))))))...)))))))))))....)))))))))...))).

Structure
-   ---         aggc   ca        uuuu       uuauuuuu   u    accuuau 
 ggc   cgucgggau    cga  uuauauau    ugauauu        auu uaac       u
 |||   |||||||||    |||  ||||||||    |||||||        ||| ||||       a
 uCG   GCAGUUUUA    GCU  AAUauaua    auuguaa        uaa auug       u
a   AGA         GAUA   --        -uau       ucacauuu   c    acacuua 


Annotation confidence Not enough data
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Genome context
dbj|BSVE01000024.1|: 13072446-13072575 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3306
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3306-3p

Accession MIMAT0015494
Description Bombyx mori bmo-miR-3306-3p mature miRNA
Sequence 105 - UAAUCGAUAGAUUUUGACGAGAGC - 128
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415