Stem-loop bmo-mir-3308

Accession

MI0014365

Description

Bombyx mori bmo-mir-3308 precursor miRNA

Sequence

8597 reads, 139.0 reads per million, 34 experiments

aucauacuuuaucuugguaauugguugucuggauUUAUGAAGCGAAGGCGGACUGUUAaucaaagacgugaucuuccuuggucuucuaggcaaugggacaaaaUCAUCUGAAAAGUGGAG
.((.((((((.((.((((..((.((((((((((...((.(((.(((((((..((.........)).)))...))))))).))..)))))))))).)).....))))...)))))))))).

Structure

a  a      a  --u    ---aa  g          uUU  G   C    ---   GA  GUU 
 uc uacuuu uc   uggu     uu guugucugga   AU AAG GAAG   GCG  CU   A
 || |||||| ||   ||||     || ||||||||||   || ||| ||||   |||  ||   a
 AG GUGAAA AG   ACUa     gg uaacggaucu   ug uuc cuuc   ugc  ga   u
G  -      -  UCU    aaaca  g          -uc  g   -    uag   -a  aac 

Annotation confidence Low

Genome context

dbj|BSVE01000014.1|: 2392439-2392558 [-]

Mature bmo-miR-3308-5p

• Accession: MIMAT0015496
• Description: Bombyx mori bmo-miR-3308-5p mature miRNA
• Sequence: 35 - UUAUGAAGCGAAGGCGGACUGUUA - 58
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3308-3p

• Accession: MIMAT0015497
• Description: Bombyx mori bmo-miR-3308-3p mature miRNA
• Sequence: 104 - UCAUCUGAAAAGUGGAG - 120
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415