Stem-loop bmo-mir-3311

Accession

MI0014368

Description

Bombyx mori bmo-mir-3311 precursor miRNA

Sequence

3742 reads, 157.0 reads per million, 20 experiments

aaaaggaacgcccacagaacuggcagguccaaccuggcgcauccugACCCACAGGAUCUGCGCCGGCGGAACCCcgCACAGUCGGGUUAUCGCCUG
...(((...((((...((.(((((.(((((...(((((((((((((.....)))))..)))))))).)))..)).)).))))))))).....))).

Structure

aaa   --aac    aca  a   -  a  --   aac        --     A 
   agg     gccc   ga cug gc gg  ucc   cuggcgca  uccug C
   |||     ||||   || ||| || ||  |||   ||||||||  ||||| C
   UCC     UGGG   CU GAC Cg CC  AGG   GGCCGCGU  AGGAC C
--G   GCUAU    ---  -   A  c  CA   --C        CU     A 

Annotation confidence Low

Genome context

dbj|BSVE01000011.1|: 4376584-4376679 [-]

Mature bmo-miR-3311-5p

• Accession: MIMAT0015500
• Description: Bombyx mori bmo-miR-3311-5p mature miRNA
• Sequence: 47 - ACCCACAGGAUCUGCGCCGGCGGAACCC - 74
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3311-3p

• Accession: MIMAT0053251
• Description: Bombyx mori bmo-miR-3311-3p mature miRNA
• Sequence: 77 - CACAGUCGGGUUAUCGCCUG - 96
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415