miRBase entry: bmo-mir-3311

Dead hairpin entry

Stem-loop bmo-mir-3311


Accession
MI0014368
Description
Bombyx mori bmo-mir-3311 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

3742 reads, 157.0 reads per million, 20 experiments
aaaaggaacgcccacagaacuggcagguccaaccuggcgcauccugACCCACAGGAUCUGCGCCGGCGGAACCCcgCACAGUCGGGUUAUCGCCUG
...(((...((((...((.(((((.(((((...(((((((((((((.....)))))..)))))))).)))..)).)).))))))))).....))).

Structure
aaa   --aac    aca  a   -  a  --   aac        --     A 
   agg     gccc   ga cug gc gg  ucc   cuggcgca  uccug C
   |||     ||||   || ||| || ||  |||   ||||||||  ||||| C
   UCC     UGGG   CU GAC Cg CC  AGG   GGCCGCGU  AGGAC C
--G   GCUAU    ---  -   A  c  CA   --C        CU     A