Stem-loop bmo-mir-3317

Accession

MI0014375

Description

Bombyx mori bmo-mir-3317 precursor miRNA

Sequence

9482 reads, 169.0 reads per million, 34 experiments

aaucguugaaagguuugggcugcauuucuaagaccaaaacucauucgcggaaauUCAUAUAGACCGAACGGCGUGAUAAuugccgucuucucuaugucgucgggguuUACAGGAAUGUUGUGAUAAGCUCUGcagacgu
...((((...(((((((.((.((((((((.(((((.........(((((.......(((((((....((((((.......))))))....))))))))).))))))))..)))))))).))..))))).))...)))).

Structure

aau    gaa  -     -g  u        -a     aaaacucau   -  gaaauUC       CCGA      UG 
   cguu   ag guuug  gc gcauuucu  agacc         ucg cg       AUAUAGA    ACGGCG  A
   ||||   || |||||  || ||||||||  |||||         ||| ||       |||||||    ||||||  U
   gcag   UC CGAAU  UG UGUAAGGA  Uuugg         ggc gc       uguaucu    ugccgu  A
--u    acG  U     AG  U        CA     ---------   u  -------       cuuc      uA 

Annotation confidence Low

Genome context

dbj|BSVE01000002.1|: 8210941-8211079 [-]

Mature bmo-miR-3317-5p

• Accession: MIMAT0053254
• Description: Bombyx mori bmo-miR-3317-5p mature miRNA
• Sequence: 55 - UCAUAUAGACCGAACGGCGUGAUAA - 79
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3317-3p

• Accession: MIMAT0015505
• Description: Bombyx mori bmo-miR-3317-3p mature miRNA
• Sequence: 108 - UACAGGAAUGUUGUGAUAAGCUCUG - 132
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415