miRBase entry: bmo-mir-3317

Dead hairpin entry

Stem-loop bmo-mir-3317


Accession
MI0014375
Description
Bombyx mori bmo-mir-3317 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

9482 reads, 169.0 reads per million, 34 experiments
aaucguugaaagguuugggcugcauuucuaagaccaaaacucauucgcggaaauUCAUAUAGACCGAACGGCGUGAUAAuugccgucuucucuaugucgucgggguuUACAGGAAUGUUGUGAUAAGCUCUGcagacgu
...((((...(((((((.((.((((((((.(((((.........(((((.......(((((((....((((((.......))))))....))))))))).))))))))..)))))))).))..))))).))...)))).

Structure
aau    gaa  -     -g  u        -a     aaaacucau   -  gaaauUC       CCGA      UG 
   cguu   ag guuug  gc gcauuucu  agacc         ucg cg       AUAUAGA    ACGGCG  A
   ||||   || |||||  || ||||||||  |||||         ||| ||       |||||||    ||||||  U
   gcag   UC CGAAU  UG UGUAAGGA  Uuugg         ggc gc       uguaucu    ugccgu  A
--u    acG  U     AG  U        CA     ---------   u  -------       cuuc      uA