Stem-loop bmo-mir-3333

Accession

MI0014391

Description

Bombyx mori bmo-mir-3333 precursor miRNA

Sequence

125855 reads, 2858.0 reads per million, 34 experiments

auacagguaccgucCCGUUCGAGAAGCAAGACAAAGUGccagaugucaaaucgcgacggcaccgucaaaucgcgacccguguugccgugguaagaauUCAAAAACUAACGGAUUGGUUUCGAacagucacccgcccgg
...(.(((........((((((((..(((..(..(((....((..((..((((((.((((((.(((.......)))..)))))).))))))..))..))....)))...)..))).))))))))........))).).

Structure

aua a   accgucCC        AG   GA -AA   Gcca  ug  aa      a      -c   aa 
   c ggu        GUUCGAGA  CAA  C   AGU    ga  uc  aucgcg cggcac  guc  a
   | |||        ||||||||  |||  |   |||    ||  ||  |||||| ||||||  |||  u
   g ccg        caAGCUUU  GUU  G   UCA    CU  ag  uggugc guugug  cag  c
--g c   cccacuga        -G   AG CAA   AAAA  ua  aa      c      cc   cg 

Annotation confidence Medium

Genome context

dbj|BSVE01000018.1|: 11104650-11104787 [+]

Mature bmo-miR-3333-5p

• Accession: MIMAT0015520
• Description: Bombyx mori bmo-miR-3333-5p mature miRNA
• Sequence: 15 - CCGUUCGAGAAGCAAGACAAAGUG - 38
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3333-3p

• Accession: MIMAT0053266
• Description: Bombyx mori bmo-miR-3333-3p mature miRNA
• Sequence: 98 - UCAAAAACUAACGGAUUGGUUUCGA - 122
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415