miRBase entry: bmo-mir-3334

Stem-loop bmo-mir-3334


Accession
MI0014392
Description
Bombyx mori bmo-mir-3334 precursor miRNA


Sequence

37175 reads, 636.0 reads per million, 34 experiments
cguugcugcucuucuaguuucccuccacgUGAACCAGAAUGAUGGAAGGACAGggcggcaggugcucuucguccgacgacgucgauguuccuuuggUUUGAUUGUUCCAGGUUCUUCAUCguguagcucaaguauugcuuu
....((((......)))).......(((((((...(((((..(((((.((((((.(((.(((.((((..((((....))))..)).)).)))))).)))).)).))))).)))))))).)))).(((.........)))..

Structure
cguugcugcucuucuaguuucccuc    -   ACC     GA     G  -    g   c   u  -  uu    c 
                         cacg UGA   AGAAU  UGGAA GA CAGg cgg agg gc uc  cguc g
                         |||| |||   |||||  ||||| || |||| ||| ||| || ||  ||||  
                         gugC ACU   UCUUG  ACCUU UU GUUU guu ucc ug ag  gcag a
-------uuucguuaugaacucgau    U   ---     -G     G  A    g   -   u  u  cu    c 


Annotation confidence High
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Genome context
dbj|BSVE01000030.1|: 2606033-2606173 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3334
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3334-5p

Accession MIMAT0015521
Description Bombyx mori bmo-miR-3334-5p mature miRNA
Sequence 30 - UGAACCAGAAUGAUGGAAGGACAG - 53
Evidence experimental
SOLID [1]
Database links

Mature bmo-miR-3334-3p

Accession MIMAT0053267
Description Bombyx mori bmo-miR-3334-3p mature miRNA
Sequence 97 - UUUGAUUGUUCCAGGUUCUUCAUC - 120
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415