miRBase entry: bmo-mir-3340

Stem-loop bmo-mir-3340


Accession
MI0014398
Description
Bombyx mori bmo-mir-3340 precursor miRNA


Sequence

133719 reads, 2796.0 reads per million, 34 experiments
gcagUGUCUCGAGGUCACUGCUCcggagggguuugucaggagggagaUAUACGGAUGCGAUGACGAUCGGCUgg
.((((....(((.((((.(((((((.....((((.((....)).))))...)))).))).))))..))))))).

Structure
g    GUCU   -G    C   -    gaggg    g  a 
 cagU    CGA  GUCA UGC UCcg     guuu uc g
 ||||    |||  |||| ||| ||||     |||| ||  
 gUCG    GCU  CAGU GCG AGGC     Uaga gg g
g    ----   AG    A   U    --AUA    g  a 


Annotation confidence Medium
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Genome context
dbj|BSVE01000030.1|: 470353-470426 [+]

Database links

Mature bmo-miR-3340-5p

Accession MIMAT0053270
Description Bombyx mori bmo-miR-3340-5p mature miRNA
Sequence 5 - UGUCUCGAGGUCACUGCUC - 23
Evidence experimental
SOLID [1]

Mature bmo-miR-3340-3p

Accession MIMAT0015528
Description Bombyx mori bmo-miR-3340-3p mature miRNA
Sequence 48 - UAUACGGAUGCGAUGACGAUCGGCU - 72
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415