miRBase entry: bmo-mir-3342

Dead hairpin entry

Stem-loop bmo-mir-3342


Accession
MI0014400
Description
Bombyx mori bmo-mir-3342 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

5239 reads, 118.0 reads per million, 23 experiments
aucagauuuggcgguggcucuugccacUGACCAUGGUGACGAGUCGAGCCCcccgaaacgccucacaaugagguccgggauggucgcucgcaccgaugggaUCGCUAAGCCGCCGUCCUGAA
.((((....((((((((((...((......((((((((.((((.(((.(..((((....((((((...)))))).))))..).))))))))))).))))....))..)))))))))))))).

Structure
a    auuu          cuu  cacUGA    -    A    U   G CC    aaac      c 
 ucag    ggcgguggcu   gc      CCAU GGUG CGAG CGA C  cccg    gccuca  
 ||||    ||||||||||   ||      |||| |||| |||| ||| |  ||||    |||||| a
 AGUC    CUGCCGCCGA   CG      ggua ccac gcuc gcu g  gggc    uggagu  
A    ----          -AU  --CUag    g    -    -   g ua    ---c      a