Stem-loop bmo-mir-3342

Accession

MI0014400

Description

Bombyx mori bmo-mir-3342 precursor miRNA

Sequence

5239 reads, 118.0 reads per million, 23 experiments

aucagauuuggcgguggcucuugccacUGACCAUGGUGACGAGUCGAGCCCcccgaaacgccucacaaugagguccgggauggucgcucgcaccgaugggaUCGCUAAGCCGCCGUCCUGAA
.((((....((((((((((...((......((((((((.((((.(((.(..((((....((((((...)))))).))))..).))))))))))).))))....))..)))))))))))))).

Structure

a    auuu          cuu  cacUGA    -    A    U   G CC    aaac      c 
 ucag    ggcgguggcu   gc      CCAU GGUG CGAG CGA C  cccg    gccuca  
 ||||    ||||||||||   ||      |||| |||| |||| ||| |  ||||    |||||| a
 AGUC    CUGCCGCCGA   CG      ggua ccac gcuc gcu g  gggc    uggagu  
A    ----          -AU  --CUag    g    -    -   g ua    ---c      a 

Annotation confidence Low

Genome context

dbj|BSVE01000011.1|: 4482098-4482218 [-]

Mature bmo-miR-3342-5p

• Accession: MIMAT0015529
• Description: Bombyx mori bmo-miR-3342-5p mature miRNA
• Sequence: 28 - UGACCAUGGUGACGAGUCGAGCCC - 51
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3342-3p

• Accession: MIMAT0053271
• Description: Bombyx mori bmo-miR-3342-3p mature miRNA
• Sequence: 102 - UCGCUAAGCCGCCGUCCUGAA - 122
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415