miRBase entry: bmo-mir-3343

Stem-loop bmo-mir-3343


Accession
MI0014401
Description
Bombyx mori bmo-mir-3343 precursor miRNA


Sequence

12841 reads, 327.0 reads per million, 28 experiments
gacuccuuggcaauUCUCCAUCGUUCCUGCACCGUAGCucccuuguauaucggacagucguacaacgggugcccuUCCUUGCAUUGCGGGCACGCCGGCUugucu
........(((((....((..(((.((((((..(((((.(((((((((..(.....)..)))))).))).)).......)))..)))))).)))..)).))))).

Structure
gacuccuu     uUCU  AU   U      CC   -------  u   -      au g 
        ggcaa    CC  CGU CCUGCA  GUA       GC ccc uuguau  c g
        |||||    ||  ||| ||||||  |||       || ||| ||||||  | a
        cuguU    GG  GCA GGGCGU  CGU       cg ggg aacaug  g c
-------u     ---C  CC   C      UA   UCCUucc  u   c      cu a 


Annotation confidence High
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Genome context
dbj|BSVE01000015.1|: 17803519-17803623 [+]

Database links

Mature bmo-miR-3343-5p

Accession MIMAT0015530
Description Bombyx mori bmo-miR-3343-5p mature miRNA
Sequence 15 - UCUCCAUCGUUCCUGCACCGUAGC - 38
Evidence experimental
SOLID [1]

Mature bmo-miR-3343-3p

Accession MIMAT0053272
Description Bombyx mori bmo-miR-3343-3p mature miRNA
Sequence 76 - UCCUUGCAUUGCGGGCACGCCGGCU - 100
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415