miRBase entry: bmo-mir-3347a

Stem-loop bmo-mir-3347a


Accession
MI0014405
Description
Bombyx mori bmo-mir-3347a precursor miRNA


Sequence

1001 reads, 25.0 reads per million, 25 experiments
gcggagauuuaucuaaacuugugggaccuguucuguuuaguauguaugcggcgguauuaaugagcucugcccauagcacuugcgguaauggcucaugagcgUACAUCAUUGAUCUUGCUGUCUCAAcuaggguucuguucuccc
..(((((...((((.......((((((..((.....(((((((((((((..........(((((((.((((((.......)).))))..)))))))..)))))))).)))))....)).))))))....)))).....))))).

Structure
gc     --uuu    aaacuug      cu  ucugu     -        ggcgguauua       -c    -  ua 
  ggaga     aucu       ugggac  gu     uuagu auguaugc          augagcu  ugcc ca  g
  |||||     ||||       ||||||  ||     ||||| ||||||||          |||||||  |||| ||  c
  ccucu     uggg       ACUCUG  CG     AGUUA UACAUgcg          uacucgg  augg gu  a
-c     ugucu    ---aucA      -U  -UUCU     C        --------ag       ua    c  uc 


Annotation confidence Not enough data
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Genome context
dbj|BSVE01000009.1|: 5422389-5422532 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3347a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3347a-3p

Accession MIMAT0015533
Description Bombyx mori bmo-miR-3347a-3p mature miRNA
Sequence 102 - UACAUCAUUGAUCUUGCUGUCUCAA - 126
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415