miRBase entry: bmo-mir-3350

Stem-loop bmo-mir-3350


Accession
MI0014408
Description
Bombyx mori bmo-mir-3350 precursor miRNA


Sequence

2154 reads, 45.0 reads per million, 34 experiments
uacguacaaagauuuauuaaaaauaaaaauaagaauugucauacaugcauguguuuUAAAUUGUCGGUAGUCGGUGAUAAUaauauguuUCAUGUAUUCUAAUUUUUCUUUAUAugcuuauauuuauauuguaauuguau
(((((((((........(((..(((.(((.((((((((..(((((((.(((((((....(((((((........))))))))))))))..)))))))..)))))))).))).)))..)))........)))))..)))).

Structure
-    --     agauuuau   aa   a   u        uc       -c       uUAA       GUA 
 uacg  uacaa        uaa  aua aaa aagaauug  auacaug  auguguu    AUUGUCG   G
 ||||  |||||        |||  ||| ||| ||||||||  |||||||  |||||||    |||||||    
 augu  auguu        auu  uAU UUU UUUUUAAU  UAUGUAC  uguauaa    UAAUAGU   U
u    ua     auauuuau   cg   A   C        CU       Uu       ----       GGC 


Annotation confidence Low
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Genome context
dbj|BSVE01000023.1|: 4577838-4577977 [+]

Database links

Mature bmo-miR-3350-5p

Accession MIMAT0053274
Description Bombyx mori bmo-miR-3350-5p mature miRNA
Sequence 57 - UAAAUUGUCGGUAGUCGGUGAUAAU - 81
Evidence experimental
SOLID [1]

Mature bmo-miR-3350-3p

Accession MIMAT0015535
Description Bombyx mori bmo-miR-3350-3p mature miRNA
Sequence 90 - UCAUGUAUUCUAAUUUUUCUUUAUA - 114
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415