Stem-loop bmo-mir-2733j

Accession

MI0014412

Description

Bombyx mori bmo-mir-2733j precursor miRNA

Literature search

1 open access papers mention bmo-mir-2733j
(4 sentences)

Sequence

359521 reads, 2816.0 reads per million, 27 experiments

cuucuauaucucucucuaaugcAGUCAUCAUACUCUCAGUUGAUAuguguaacauucuaUCACUGGGUGCAUGAUGAUcgugguagagagaucaucacaucacgc
..........((((((((.(((.((((((((.(.((((((.((((.(((...)))..)))))))))).).)))))))).))).))))))))..............

Structure

----cuucuauauc        a   A        A U      U    -u   u 
              ucucucua ugc GUCAUCAU C CUCAGU GAUA  gug  
              |||||||| ||| |||||||| | |||||| ||||  ||| a
              agagagau gug UAGUAGUA G GGGUCA CUau  uac  
cgcacuacacuacu        g   c        C U      -    cu   a 

Annotation confidence Medium

Genome context

dbj|BSVE01000011.1|: 367300-367404 [-]

Clustered miRNAs

17 other miRNAs are < 10 kb from bmo-mir-2733j

Mature bmo-miR-2733j-5p

• Accession: MIMAT0015539
• Description: Bombyx mori bmo-miR-2733j-5p mature miRNA
• Sequence: 23 - AGUCAUCAUACUCUCAGUUGAUA - 45
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-2733j-3p

• Accession: MIMAT0053275
• Description: Bombyx mori bmo-miR-2733j-3p mature miRNA
• Sequence: 60 - UCACUGGGUGCAUGAUGAU - 78
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415