miRBase entry: bmo-mir-3362

Stem-loop bmo-mir-3362


Accession
MI0014422
Description
Bombyx mori bmo-mir-3362 precursor miRNA


Sequence

3340 reads, 70.0 reads per million, 34 experiments
aagccguuugugaugcUGAUUUGAAGUUUAUGAAUGUUGUAgcccgguggccugguucugcacauGAUGCUACUAUAUUUAAUAAUUCUauuuuaagagguuuuauagaca
.....((((((((.(((..((((((((((((((((((.(((((...(((((........)).)))...))))).)))))).))))....)))))))).))).)))))))).

Structure
aagcc        u   GA        ----    -      U     ccg   -  cug 
     guuuguga gcU  UUUGAAGU    UUAU GAAUGU GUAgc   gug gc   g
     |||||||| |||  ||||||||    |||| |||||| |||||   ||| ||    
     cagauauu ugg  gaauuuua    AAUA UUUAUA CAUCG   uac cg   u
----a        u   -a        UCUU    A      U     UAG   a  ucu 


Annotation confidence Low
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Genome context
dbj|BSVE01000007.1|: 11769608-11769718 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3362
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3362-5p

Accession MIMAT0015548
Description Bombyx mori bmo-miR-3362-5p mature miRNA
Sequence 17 - UGAUUUGAAGUUUAUGAAUGUUGUA - 41
Evidence experimental
SOLID [1]
Database links

Mature bmo-miR-3362-3p

Accession MIMAT0053279
Description Bombyx mori bmo-miR-3362-3p mature miRNA
Sequence 66 - GAUGCUACUAUAUUUAAUAAUUCU - 89
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415