miRBase entry: bmo-mir-3381

Stem-loop bmo-mir-3381


Accession
MI0014442
Description
Bombyx mori bmo-mir-3381 precursor miRNA


Sequence

82 reads, 3.0 reads per million, 15 experiments
gagaUCAAGAUUCCUCGCAAAGGUUCACucccccaggaucauucgaugccgaagaugaaggaGUAUUCAUACCUGGCCGAUGgcgucaagaua
...(((..(((.(((((...((((..(((((......(((.((((....)))))))...)))))......))))...))).)).)))..))).

Structure
gag   AA   U  -   CAA    ----UC     cccagg   a    a 
   aUC  GAU CC UCG   AGGU      ACucc      auc uucg u
   |||  ||| || |||   ||||      |||||      ||| ||||  
   uag  cug gG AGC   UCCA      UGagg      uag aagc g
--a   aa   c  U   CGG    UACUUA     ---aag   -    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
dbj|BSVE01000014.1|: 10593425-10593517 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3381
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3381-5p

Accession MIMAT0015573
Description Bombyx mori bmo-miR-3381-5p mature miRNA
Sequence 5 - UCAAGAUUCCUCGCAAAGGUUCAC - 28
Evidence experimental
SOLID [1]

Mature bmo-miR-3381-3p

Accession MIMAT0015574
Description Bombyx mori bmo-miR-3381-3p mature miRNA
Sequence 63 - GUAUUCAUACCUGGCCGAUG - 82
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415