Stem-loop bmo-mir-3387

Accession

MI0014448

Description

Bombyx mori bmo-mir-3387 precursor miRNA

Sequence

9691 reads, 190.0 reads per million, 34 experiments

uugcugccuuuguugacuaacaacauuaAUGAAAACGAUCGUGGACUACCUuuaacgccgauauuacaagugcuaauugcuuugagauuuuacgcaacaggcaauuUUCAGGUUCGUGCAUAAUGUGCUuuugugucuacauaauagaa
...(((....(((.((((((..((((((.((...((((.(.((((...(((....((.....(((.((((.((.....)))))).)))....))....))).....)))).).)))).))))))))....))).))).)))...)))..

Structure

uug   ccuu   u   -   --ca      A  AAA    U G    --CUA   uuaa  ccgau   a    u  u 
   cug    ugu gac uaa    acauua UG   ACGA C UGGA     CCU    cg     auu caag gc a
   |||    ||| ||| |||    |||||| ||   |||| | ||||     |||    ||     ||| |||| || a
   gau    aca cug guu    UGUAAU AC   UGCU G ACUU     gga    gc     uag guuu cg u
-aa   -aau   u   u   uUCG      -  --G    U G    uuaac   caac  -auuu   a    -  u 

Annotation confidence Medium

Genome context

dbj|BSVE01000014.1|: 10571943-10572091 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-3387

Mature bmo-miR-3387-5p

• Accession: MIMAT0015585
• Description: Bombyx mori bmo-miR-3387-5p mature miRNA
• Sequence: 29 - AUGAAAACGAUCGUGGACUACCU - 51
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3387-3p

• Accession: MIMAT0015586
• Description: Bombyx mori bmo-miR-3387-3p mature miRNA
• Sequence: 107 - UUCAGGUUCGUGCAUAAUGUGCU - 129
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415