Stem-loop bmo-mir-3388

Accession

MI0014449

Description

Bombyx mori bmo-mir-3388 precursor miRNA

Sequence

19567 reads, 472.0 reads per million, 26 experiments

uuaucuucgcacgcugacaagucaaacaugccuuggcccauucacggcaguUCUUACGCAUCAGUGGCCAAACGAAgcguugcgcaacgaguuuagcugUCGCAUUGGGACCUGGAUGACUGAGcgaguggaggc
...(((((((.((((..((.((((..((......((((((....(((((((((((((((.((.((......)))).))))........)))...))))))))...)))).))))..)))))))))).))))))).

Structure

uua       a    ga  a    aa  ugccuu  -    uuca        ---   --------    A  A  GG 
   ucuucgc cgcu  ca guca  ca      gg ccca    cggcaguU   CUU        ACGC UC GU  C
   ||||||| ||||  || ||||  ||      || ||||    ||||||||   |||        |||| || ||   
   ggaggug gcGA  GU CAGU  GU      CC GGGU    GCUgucga   gag        ugcg AG CA  C
--c       a    --  -    AG  ------  A    -UAC        uuu   caacgcgu    A  -  AA 

Annotation confidence Low

Genome context

dbj|BSVE01000012.1|: 16200550-16200684 [-]

Mature bmo-miR-3388-5p

• Accession: MIMAT0015587
• Description: Bombyx mori bmo-miR-3388-5p mature miRNA
• Sequence: 52 - UCUUACGCAUCAGUGGCCAAACGAA - 76
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3388-3p

• Accession: MIMAT0015588
• Description: Bombyx mori bmo-miR-3388-3p mature miRNA
• Sequence: 100 - UCGCAUUGGGACCUGGAUGACUGAG - 124
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415