Stem-loop bmo-mir-3394

Accession

MI0014457

Description

Bombyx mori bmo-mir-3394 precursor miRNA

Sequence

14886 reads, 509.0 reads per million, 12 experiments

ucggcguccucgUACAAUCGCCUUCCGGGUGCCUUGAUGAUUCGGGAGCCCCAAGCGACauguuucgcauugagguccccaaccaccaaggccggauggcgaucaugguucaaggcccgucu
.(((.(.(((.(..((((((((.((((...((((((.((.((.(((.(((.(((((((......)))).))).))).))))).)).)))))))))).))))))..))...).)))))))...

Structure

--u   c u   c -UA  --      U    GGU      A  A  C   A   C   -    Ca 
   cgg g ccu g   CA  AUCGCC UCCG   GCCUUG UG UU GGG GCC CAA GCGA  u
   ||| | ||| |   ||  |||||| ||||   |||||| || || ||| ||| ||| ||||   
   gcc c gga c   gu  uagcgg aggc   cggaac ac aa ccc ugg guu cgcu  g
ucu   - -   a uug  ac      u    ---      c  c  -   c   a   a    uu 

Annotation confidence High

Genome context

dbj|BSVE01000025.1|: 773847-773968 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bmo-mir-3394

Mature bmo-miR-3394-5p

• Accession: MIMAT0053281
• Description: Bombyx mori bmo-miR-3394-5p mature miRNA
• Sequence: 35 - UGAUGAUUCGGGAGCCCCAAGCGAC - 59
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3394-3p

• Accession: MIMAT0015598
• Description: Bombyx mori bmo-miR-3394-3p mature miRNA
• Sequence: 13 - UACAAUCGCCUUCCGGGUGCCUUGA - 37
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415