miRBase entry: bmo-mir-3395

Stem-loop bmo-mir-3395


Accession
MI0014458
Description
Bombyx mori bmo-mir-3395 precursor miRNA


Sequence

11 reads, 4 reads per million, 3 experiments
gacugguagcuccccguaguaccggugcgaugguccgggccuggcuuggcgggcggccgucgcgauggcagcAGCUAGUUCGGCGAUGUCGCUCUucggugcgacagguacggcaaucggug
.((((((.(((.((.((.(((((((.((((((..((((((.(((((.(((((....)))))((....))...)))))))))))...))))))...))))))).)).))...))).)))))).

Structure
g      a   --c  c  a       --u      -gu      c     ----------u     g 
 acuggu gcu   cc gu guaccgg   gcgaug   ccgggc uggcu           ggcgg c
 |||||| |||   || || |||||||   ||||||   |||||| |||||           |||||  
 uggcua cgg   gg ca cguggcu   CGCUGU   GGCUUG AUCGA           cugcc g
g      a   cau  a  g       UCU      AGC      -     cgacgguagcg     g 


Annotation confidence Not enough data
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Genome context
NW_004581756.1: 230693-230814 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bmo-mir-3395
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3395

Accession MIMAT0015599
Description Bombyx mori bmo-miR-3395 mature miRNA
Sequence 73 - AGCUAGUUCGGCGAUGUCGCUCU - 95
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415