Stem-loop bmo-mir-3395

Accession

MI0014458

Description

Bombyx mori bmo-mir-3395 precursor miRNA

Sequence

9746 reads, 225.0 reads per million, 29 experiments

gacugguagcuccccguagUACCGGUGCGAUGGUCCGGGCCUGgcuuggcgggcggccgucgcgauggcagcAGCUAGUUCGGCGAUGUCGCUCUucggugcgacagguacggcaaucggug
.((((((.(((.((.((.(((((((.((((((..((((((.(((((.(((((....)))))((....))...)))))))))))...))))))...))))))).)).))...))).)))))).

Structure

g      a   --c  c  a       --U      -GU      C     ----------u     g 
 acuggu gcu   cc gu gUACCGG   GCGAUG   CCGGGC UGgcu           ggcgg c
 |||||| |||   || || |||||||   ||||||   |||||| |||||           |||||  
 uggcua cgg   gg ca cguggcu   CGCUGU   GGCUUG AUCGA           cugcc g
g      a   cau  a  g       UCU      AGC      -     cgacgguagcg     g 

Annotation confidence Medium

Genome context

dbj|BSVE01000025.1|: 778364-778485 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bmo-mir-3395

Mature bmo-miR-3395-5p

• Accession: MIMAT0053282
• Description: Bombyx mori bmo-miR-3395-5p mature miRNA
• Sequence: 20 - UACCGGUGCGAUGGUCCGGGCCUG - 43
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3395-3p

• Accession: MIMAT0015599
• Description: Bombyx mori bmo-miR-3395-3p mature miRNA
• Sequence: 73 - AGCUAGUUCGGCGAUGUCGCUCU - 95
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415