miRBase entry: bmo-mir-3405

Dead hairpin entry

Stem-loop bmo-mir-3405


Accession
MI0014469
Description
Bombyx mori bmo-mir-3405 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

39740 reads, 721.0 reads per million, 34 experiments
ucuuuugugacaaaucaccauaauuuUCCAUUGUGUUCUUGAAACUCUCUAGAUUucuucguaacgguguugaccguuucuuuuucacaauaaagcgauugaggguacguucugaaUAACUGGUAGAAACUGGAGGUgugucuuggau
........((((.(((.(((...(((((((...(((((..(((((((((.........((((((((((....))))))................))))..))))))...))).)))))..))).))))..))).))).))))......

Structure
ucuuuugu    a   a   uaa    -   UUG     UU   ---      UAGAUUucu    ----------------      g 
        gaca auc cca   uuuU CCA   UGUUC  GAA   ACUCUC         ucgu                aacggu u
        |||| ||| |||   |||| |||   |||||  |||   ||||||         ||||                ||||||  
        cugu UGG GGU   AAGA GGU   AUaag  cuu   ugggag         agcg                uugcca u
--uagguu    g   A   -CA    U   -CA     -u   gca      -------uu    aaauaacacuuuuucu      g