miRBase entry: bmo-mir-3405

Stem-loop bmo-mir-3405


Accession
MI0014469
Description
Bombyx mori bmo-mir-3405 precursor miRNA


Sequence

39740 reads, 721.0 reads per million, 34 experiments
ucuuuugugacaaaucaccauaauuuUCCAUUGUGUUCUUGAAACUCUCUAGAUUucuucguaacgguguugaccguuucuuuuucacaauaaagcgauugaggguacguucugaaUAACUGGUAGAAACUGGAGGUgugucuuggau
........((((.(((.(((...(((((((...(((((..(((((((((.........((((((((((....))))))................))))..))))))...))).)))))..))).))))..))).))).))))......

Structure
ucuuuugu    a   a   uaa    -   UUG     UU   ---      UAGAUUucu    ----------------      g 
        gaca auc cca   uuuU CCA   UGUUC  GAA   ACUCUC         ucgu                aacggu u
        |||| ||| |||   |||| |||   |||||  |||   ||||||         ||||                ||||||  
        cugu UGG GGU   AAGA GGU   AUaag  cuu   ugggag         agcg                uugcca u
--uagguu    g   A   -CA    U   -CA     -u   gca      -------uu    aaauaacacuuuuucu      g 


Annotation confidence Low
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Genome context
dbj|BSVE01000020.1|: 8491169-8491316 [-]

Database links

Mature bmo-miR-3405-5p

Accession MIMAT0015610
Description Bombyx mori bmo-miR-3405-5p mature miRNA
Sequence 27 - UCCAUUGUGUUCUUGAAACUCUCUAGAUU - 55
Evidence experimental
SOLID [1]

Mature bmo-miR-3405-3p

Accession MIMAT0053289
Description Bombyx mori bmo-miR-3405-3p mature miRNA
Sequence 117 - UAACUGGUAGAAACUGGAGGU - 137
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415