miRBase entry: bmo-mir-3405

Stem-loop bmo-mir-3405


Accession
MI0014469
Description
Bombyx mori bmo-mir-3405 precursor miRNA


Sequence

50 reads, 20 reads per million, 3 experiments
ucuuuugugacaaaucaccauaauuuUCCAUUGUGUUCUUGAAACUCUCUAgauuucuucguaacgguguugaccguuucuuuuucacaauaaagcgauugaggguacguucugaauaacugguagaaacuggaggugugucuuggau
........((((.(((.(((...(((((((...(((((..(((((((((.........((((((((((....))))))................))))..))))))...))).)))))..))).))))..))).))).))))......

Structure
ucuuuugu    a   a   uaa    -   UUG     UU   ---      UAgauuucu    ----------------      g 
        gaca auc cca   uuuU CCA   UGUUC  GAA   ACUCUC         ucgu                aacggu u
        |||| ||| |||   |||| |||   |||||  |||   ||||||         ||||                ||||||  
        cugu ugg ggu   aaga ggu   auaag  cuu   ugggag         agcg                uugcca u
--uagguu    g   a   -ca    u   -ca     -u   gca      -------uu    aaauaacacuuuuucu      g 


Annotation confidence Not enough data
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Genome context
NW_004581825.1: 161550-161697 [-]

Database links

Mature bmo-miR-3405

Accession MIMAT0015610
Description Bombyx mori bmo-miR-3405 mature miRNA
Sequence 27 - UCCAUUGUGUUCUUGAAACUCUCUA - 51
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415