Stem-loop bmo-mir-3406

Accession

MI0014470

Description

Bombyx mori bmo-mir-3406 precursor miRNA

Sequence

173 reads, 28 reads per million, 3 experiments

cguucgcauauuuagaugaugugauaaUAGUAAGUAGCACGUUUGAUGAGCAuguuagucuucuucuUCGCGUGUUAGACAAGCUGCGCCAUGCUaaucuaacaauuaauuuagaaaagugugaauu
.((((((((.(((((((..(((.....(((((.(..(((.(((((...(((((((.((.......))..)))))))...))))))))..).))))).....)))....)))))))...)))))))).

Structure

c        --a       --ga   gauaa     A UA   C     AUG       -u  uc 
 guucgcau   uuuagau    ugu     UAGUA G  GCA GUUUG   AGCAugu  ag  u
 ||||||||   |||||||    |||     ||||| |  ||| |||||   |||||||  ||  u
 uaagugug   agauuua    aca     aUCGU C  CGU CGAAC   UUGUGCG  uc  c
u        aaa       auua   aucua     A CG   -     AGA       CU  uu 

Annotation confidence Low

Genome context

NW_004581707.1: 1075057-1075183 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-3406

Mature bmo-miR-3406-5p

• Accession: MIMAT0015611
• Description: Bombyx mori bmo-miR-3406-5p mature miRNA
• Sequence: 28 - UAGUAAGUAGCACGUUUGAUGAGCA - 52
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3406-3p

• Accession: MIMAT0015612
• Description: Bombyx mori bmo-miR-3406-3p mature miRNA
• Sequence: 68 - UCGCGUGUUAGACAAGCUGCGCCAUGCU - 95
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415