Stem-loop bmo-mir-3420

Accession

MI0014485

Description

Bombyx mori bmo-mir-3420 precursor miRNA

Sequence

9543 reads, 201.0 reads per million, 32 experiments

agcgaUCAGAAUUUACUGUUAUUGCCUGGCCUcgcucauuuucgaagaaaugggguccgaugauucuaugagccgacauggccgcccAAACCGUAACUUUAAGCGAAUGCA
.(((.((.(((.((((.(((...((..((((((((((((............((((((....))))))))))).)))...))))))...))).)))).)))....)).))).

Structure

a   a  ---A   U    U   AUU  CU    ---   -     uuucgaagaaau      c 
 gcg UC    GAA UUAC GUU   GC  GGCC   Ucg cucau            gggguc g
 ||| ||    ||| |||| |||   ||  ||||   ||| |||||            ||||||  
 CGU AG    UUU AAUG CAA   cg  ccgg   agc gagua            ucuuag a
A   A  CGAA   C    C   Acc  --    uac   c     ------------      u 

Annotation confidence Low

Genome context

dbj|BSVE01000024.1|: 13388481-13388591 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-3420

Mature bmo-miR-3420-5p

• Accession: MIMAT0015628
• Description: Bombyx mori bmo-miR-3420-5p mature miRNA
• Sequence: 6 - UCAGAAUUUACUGUUAUUGCCUGGCCU - 32
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3420-3p

• Accession: MIMAT0053290
• Description: Bombyx mori bmo-miR-3420-3p mature miRNA
• Sequence: 88 - AAACCGUAACUUUAAGCGAAUGCA - 111
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415