miRBase entry: bmo-mir-3421

Stem-loop bmo-mir-3421

Accession

MI0014486

Description

Bombyx mori bmo-mir-3421 precursor miRNA

Sequence

aaacagccgaauucgcaauaguuguuggcgugcuuUCAAACGAAUUAAAUCAGAGGUCUuugguagugaagcgacacucauuacugcaccaauguuauuagguauguuugauguugaaacaaaaguuacuauuguaagugucgcuagug
..(((((...(((.((((((((..(((....((..(((((((..((((..((..(((...(((((((((........))))))))).)))..))...))))...))))))).)).....))).....)))))))).)))...))).)).

Structure

aa  -   cga   c        ---ug   -gcgu  uu       -AA    -AU  GA   CUu         agc 
  ac agc   auu gcaauagu     uug     gc  UCAAACG   UUAA   CA  GGU   ugguaguga   g
  || |||   ||| ||||||||     |||     ||  |||||||   ||||   ||  |||   |||||||||    
  ug ucg   uga uguuauca     aac     ug  aguuugu   gauu   gu  cca   gucauuacu   a
-g  a   cug   a        uugaa   aaagu  -u       aug    auu  aa   --c         cac

Annotation confidence Not enough data

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Genome context

NW_004582026.1: 5987644-5987792 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-3421

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bmo-miR-3421

Accession	MIMAT0015629
Description	Bombyx mori bmo-miR-3421 mature miRNA
Sequence	36 - UCAAACGAAUUAAAUCAGAGGUCU - 59
Evidence	experimental SOLID [1]

References

PubMed ID: 20229201
Novel microRNAs in silkworm (Bombyx mori)
"Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
"Funct Integr Genomics (2010) 10:405-415