Stem-loop hsv2-mir-H6

Accession

MI0014714

Description

Herpes Simplex Virus 2 hsv2-mir-H6 precursor miRNA

Sequence

ggcgucgggacucgcggagggccggagAAUGGAAGGCGAGGGGAUGCaggaggaggaucgggacucCCCAUCUUCUGCCCUUCCAUCCUccguuuuuccgcuuuccaccgcc
((((..((((...((((((((.(((((.((((((((..(((((((...((.((((........)))))))))))))..)))))))).))))).)))))))).))))..))))

Structure

    uc    cuc        c     A        CG       GCa  a    gau 
ggcg  ggga   gcggaggg cggag AUGGAAGG  AGGGGAU   gg ggag   c
||||  ||||   |||||||| ||||| ||||||||  |||||||   || ||||    
ccgc  ccuu   cgccuuuu gccUC UACCUUCC  UCUUCUA   CC Ccuc   g
    ca    --u        u     C        CG       ---  -    agg 

Annotation confidence Not enough data

Genome context

Unknown

Mature hsv2-miR-H6-5p

• Accession: MIMAT0015651
• Description: Herpes Simplex Virus 2 hsv2-miR-H6-5p mature miRNA
• Sequence: 28 - AAUGGAAGGCGAGGGGAUGC - 47
• Evidence: experimental ; Illumina [1]

Mature hsv2-miR-H6-3p

• Accession: MIMAT0015652
• Description: Herpes Simplex Virus 2 hsv2-miR-H6-3p mature miRNA
• Sequence: 67 - CCCAUCUUCUGCCCUUCCAUCCU - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20181707
   Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2
   "Jurak I, Kramer MF, Mellor JC, van Lint AL, Roth FP, Knipe DM, Coen DM"
   "J Virol (2010) 84:4659-4672