miRBase entry: nvi-mir-13a

Stem-loop nvi-mir-13a


Accession
MI0014725
Description
Nasonia vitripennis nvi-mir-13a precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

gagcagagacauggaacuuuugcgguccgauacaucaaauugguuguggaaugucucgucuuuccaUAUCACAGCCAUUUUGAUGAGcuuggcccguagaacu
.................((((((((.((((..(((((((.(((((((((.(((...........))).))))))))).)))))))...)))).))))))))..

Structure
gagcagagacauggaac        u    -ua       u         a   ucuc 
                 uuuugcgg ccga   caucaaa ugguugugg aug    g
                 |||||||| ||||   ||||||| ||||||||| |||    u
                 aagaugcc gguu   GUAGUUU ACCGACACU Uac    c
---------------uc        c    cGA       U         A   cuuu 


Annotation confidence Not enough data
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Genome context
chr1: 8079335-8079437 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from nvi-mir-13a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nvi-miR-13a

Accession MIMAT0015664
Description Nasonia vitripennis nvi-miR-13a mature miRNA
Sequence 67 - UAUCACAGCCAUUUUGAUGAG - 87
Evidence not_experimental

References

  1. PubMed ID: 20075255
    Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
    "Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van"
    "Science (2010) 327:343-348