miRBase entry: nvi-mir-2a

Stem-loop nvi-mir-2a


Accession
MI0014727
Description
Nasonia vitripennis nvi-mir-2a precursor miRNA


Sequence

guggagaucgcgucgcucacaaaguggcuguuguaugucggauuucuuuggcucaUAUCACAGCCAGCUUUGUUGAGCggugagcgucuuccu
..(((((.(((.(((((((((((((((((((.(((((.(.((.....)).)..))))).))))))).))))).)))))))...))))))))..

Structure
gu     u   --g       -     -       u     -u g  u 
  ggaga cgc   ucgcuca caaag uggcugu guaug  c ga u
  ||||| |||   ||||||| ||||| ||||||| |||||  | || u
  cuucu gcg   ggCGAGU GUUUC ACCGACA UAUac  g uu c
uc     -   agu       U     G       C     uc g  u 


Annotation confidence Not enough data
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Genome context
chr1: 8079789-8079881 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from nvi-mir-2a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nvi-miR-2a

Accession MIMAT0015666
Description Nasonia vitripennis nvi-miR-2a mature miRNA
Sequence 56 - UAUCACAGCCAGCUUUGUUGAGC - 78
Evidence experimental
454 [1]

References

  1. PubMed ID: 20075255
    Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
    "Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van"
    "Science (2010) 327:343-348