Stem-loop ssc-mir-338

Accession

MI0014773

Description

Sus scrofa ssc-mir-338 precursor miRNA

Literature search

14 open access papers mention ssc-mir-338
(39 sentences)

Sequence

156061 reads, 328.0 reads per million, 153 experiments

ccguccuccccAACAAUAUCCUGGUGCUGAGUgaugacacacgcaacUCCAGCAUCAGUGAUUUUGUUGaagagggcag
..((((((..((((((.(((((((((((((((..((.....))..))).))))))))).))).))))))..))))))..

Structure

cc      cc      U   -         -   ga  a 
  guccuc  cAACAA AUC CUGGUGCUG AGU  ug c
  ||||||  |||||| ||| ||||||||| |||  || a
  cgggag  GUUGUU UAG GACUACGAC Uca  gc c
ga      aa      U   U         C   ac  a 

Annotation confidence High

Genome context

chr12: 1507084-1507162 [+]

Mature ssc-miR-338-5p

• Accession: MIMAT0052650
• Description: Sus scrofa ssc-miR-338-5p mature miRNA
• Sequence: 12 - AACAAUAUCCUGGUGCUGAGU - 32
• Evidence: experimental ; cloned [1], Illumina [2]

Mature ssc-miR-338-3p

• Accession: MIMAT0015713
• Description: Sus scrofa ssc-miR-338-3p mature miRNA
• Sequence: 48 - UCCAGCAUCAGUGAUUUUGUUG - 69
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100