miRBase entry: ppy-mir-34c

Stem-loop ppy-mir-34c

Accession

MI0014808

Description

Pongo pygmaeus ppy-mir-34c precursor miRNA

Sequence

agucuaguuacuAGGCAGUGUAGUUAGCUGAUUGCuaauaguaccAAUCACUAACCACACGGCCAGGuaaaaagauu
.((((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..)))).

Structure

a    ag     A   A    A     C      C  a 
 gucu  uuacu GGC GUGU GUUAG UGAUUG ua u
 ||||  ||||| ||| |||| ||||| |||||| ||  
 uaga  aauGG CCG CACA CAAUC ACUAAc au a
u    aa     A   G    C     -      c  g

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chr11: 108239300-108239376 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-34c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-34c-5p

Accession	MIMAT0015742
Description	Pongo pygmaeus ppy-miR-34c-5p mature miRNA
Sequence	13 - AGGCAGUGUAGUUAGCUGAUUGC - 35
Evidence	not_experimental

Mature ppy-miR-34c-3p

Accession	MIMAT0015743
Description	Pongo pygmaeus ppy-miR-34c-3p mature miRNA
Sequence	46 - AAUCACUAACCACACGGCCAGG - 67
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64