miRBase entry: ppy-mir-133b

Stem-loop ppy-mir-133b

Accession

MI0014826

Description

Pongo pygmaeus ppy-mir-133b precursor miRNA

Sequence

ccucagaagaaagaugcccccugcucuggcuggucaaacggaaccaaguccgucuuccugagaggUUUGGUCCCCUUCAACCAGCUAcagcagggcuggcaaugccaaguacuuggaga
..............(((((((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))))..))))...((((....))))...

Structure

----ccucagaagaaaga    --       c        ca  c  a      u  g    c 
                  ugcc  cccugcu uggcuggu  aa gg accaag cc ucuu  
                  ||||  ||||||| ||||||||  || || |||||| || |||| c
                  acgg  gggacga AUCGACCA  UU CC UGGUUU gg agag  
agagguucaugaaccgua    uc       c        AC  C  C      -  -    u

Annotation confidence Not enough data

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Genome context

chr6: 52486818-52486936 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-133b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-133b

Accession	MIMAT0015756
Description	Pongo pygmaeus ppy-miR-133b mature miRNA
Sequence	66 - UUUGGUCCCCUUCAACCAGCUA - 87
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64