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miRBase entry: ppy-mir-320d-2
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
ppy-mir-320d-2
Accession
MI0014890
Description
Pongo pygmaeus
ppy-mir-320d-2 precursor miRNA
Sequence
uucucuucccaguucuucuuggagucaggAAAAGCUGGGUUGAGAGGA
(((((..(((((((.((((((....)))))).)))))))..)))))..
Structure
-- uu c g uucuc cccaguu uucuug a ||||| ||||||| |||||| GAGAG GGGUCGA AAggac g AG UU A u
Annotation confidence
Not enough data
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Genome context
chrX: 140667743-140667790 [-]
Database links
Mature
ppy-miR-320d
Accession
MIMAT0015824
Description
Pongo pygmaeus
ppy-miR-320d mature miRNA
Sequence
30 - AAAAGCUGGGUUGAGAGGA - 48
Evidence
not_experimental
References
PubMed ID:
20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64