miRBase entry: ppy-mir-450b

Stem-loop ppy-mir-450b

Accession

MI0014951

Description

Pongo pygmaeus ppy-mir-450b precursor miRNA

Sequence

gcagaauuauUUUUGCAAUAUGUUCCUGAAUAuguaauauaaguguaUUGGGAUCAUUUUGCAUCCAUAguuuuguau
((((((((((...(((((.(((.((((((((((.........)))).)))))).))).)))))...))))))))))..

Structure

--          UUU     U   U      -    gua 
  gcagaauuau   UGCAA AUG UCCUGA AUAu   a
  ||||||||||   ||||| ||| |||||| ||||   u
  uguuuugAUA   ACGUU UAC AGGGUU ugug   a
ua          CCU     U   U      a    aau

Annotation confidence Not enough data

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Genome context

chrX: 133999430-133999507 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppy-mir-450b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-450b-5p

Accession	MIMAT0015894
Description	Pongo pygmaeus ppy-miR-450b-5p mature miRNA
Sequence	11 - UUUUGCAAUAUGUUCCUGAAUA - 32
Evidence	not_experimental

Mature ppy-miR-450b-3p

Accession	MIMAT0015895
Description	Pongo pygmaeus ppy-miR-450b-3p mature miRNA
Sequence	48 - UUGGGAUCAUUUUGCAUCCAUA - 69
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64