miRBase entry: ppy-mir-485

Stem-loop ppy-mir-485

Accession

MI0014957

Description

Pongo pygmaeus ppy-mir-485 precursor miRNA

Sequence

acuuggagAGAGGCUGGCCGUGAUGAAUUCgauucaucaaagcgaGUCAUACACGGCUCUCCUCUCUuuuagu
(((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).)))

Structure

   u         CU       -    A    auuc 
acu ggagAGAGG  GGCCGUG AUGA UUCg    a
||| |||||||||  ||||||| |||| ||||    u
uga uuUCUCUCC  UCGGCAC UACU Gagc    c
   u         UC       A    -    gaaa

Annotation confidence Not enough data

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Genome context

chr14: 102618120-102618192 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from ppy-mir-485

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-485-5p

Accession	MIMAT0015902
Description	Pongo pygmaeus ppy-miR-485-5p mature miRNA
Sequence	9 - AGAGGCUGGCCGUGAUGAAUUC - 30
Evidence	not_experimental

Mature ppy-miR-485-3p

Accession	MIMAT0015903
Description	Pongo pygmaeus ppy-miR-485-3p mature miRNA
Sequence	46 - GUCAUACACGGCUCUCCUCUCU - 67
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64