miRBase entry: ppy-mir-506

Stem-loop ppy-mir-506

Accession

MI0014979

Description

Pongo pygmaeus ppy-mir-506 precursor miRNA

Sequence

gccaccaccaucagcuacgcuauguguagugccuuauucaggaagguguuacuuaauagauuaauauuugUAAGGCACCCUUCUGAGUAGAguaaugugcaacauggacaacauuugugguggc
((((((((.....(((((((...)))))))((.((((((((((.(((((..((((.(((((....)))))))))))))).)))))))))).))..(((.((...)).)))......))))))))

Structure

        -caucagcuacgcuauguguagu  c          a     ua    a     u 
gccaccac                       gc uuauucagga ggugu  cuua uagau a
||||||||                       || |||||||||| |||||  |||| |||||  
cgguggug                       ug GAUGAGUCUU CCACG  GAAU guuua a
        uuuacaacagguacaacguguaa  A          C     --    -     u

Annotation confidence Not enough data

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Genome context

chrX: 147115915-147116038 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppy-mir-506

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-506

Accession	MIMAT0015929
Description	Pongo pygmaeus ppy-miR-506 mature miRNA
Sequence	71 - UAAGGCACCCUUCUGAGUAGA - 91
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64