miRBase entry: ppy-mir-513a-2

Stem-loop ppy-mir-513a-2

Accession

MI0014991

Description

Pongo pygmaeus ppy-mir-513a-2 precursor miRNA

Sequence

ggaugccacauucagccauucagugugcagugccuUUCACAGGGAGGUGUCAUuuaugugaacuaaaauaUAAAUUUCACCUUUCUGAGAAGgguaauguacagcaugcacugcguauguggugucc
(((((((((((.(((.(((....((((((.((((((((.((((((((((..((((((((........))))))))..)))))))))).)))))))).))))))..)))..)))...)))))))))))

Structure

           --u   -c   ucag      g        A          UC        gaa 
ggaugccacau   cag  cau    ugugca ugccuUUC CAGGGAGGUG  AUuuaugu   c
|||||||||||   |||  |||    |||||| |||||||| ||||||||||  ||||||||    
ccuguggugua   guc  gua    acaugu auggGAAG GUCUUUCCAC  UAAAUaua   u
           ugc   ac   --cg      a        A          UU        aaa

Annotation confidence Not enough data

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Genome context

chrX: 147110689-147110815 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppy-mir-513a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-513a-5p

Accession	MIMAT0015938
Description	Pongo pygmaeus ppy-miR-513a-5p mature miRNA
Sequence	36 - UUCACAGGGAGGUGUCAU - 53
Evidence	not_experimental

Mature ppy-miR-513a-2-3p

Accession	MIMAT0016978
Description	Pongo pygmaeus ppy-miR-513a-2-3p mature miRNA
Sequence	71 - UAAAUUUCACCUUUCUGAGAAG - 92
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64