miRBase entry: ppy-mir-518a-1

Stem-loop ppy-mir-518a-1

Accession

MI0015006

Description

Pongo pygmaeus ppy-mir-518a-1 precursor miRNA

Sequence

ucucaugcugugacuCUGCAAAGGGAAGCCCUUUCuguugucuaaaagaaaaGAAAGCGCUUCCCUUUGGAGUGuuacgguuugaga
(((((.((((((((.((.(((((((((((.((((((....(((...)))..)))))).))))))))))).)).)))))))).)))))

Structure

     u        u  G           C      guug   a 
ucuca gcugugac CU CAAAGGGAAGC CUUUCu    ucu  
||||| |||||||| || ||||||||||| ||||||    ||| a
agagu uggcauuG GA GUUUCCCUUCG GAAAGa    aga  
     u        U  G           C      --aa   a

Annotation confidence Not enough data

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Genome context

chr19: 55505640-55505726 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppy-mir-518a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-518a-5p

Accession	MIMAT0015951
Description	Pongo pygmaeus ppy-miR-518a-5p mature miRNA
Sequence	16 - CUGCAAAGGGAAGCCCUUUC - 35
Evidence	not_experimental

Mature ppy-miR-518a-3p

Accession	MIMAT0015952
Description	Pongo pygmaeus ppy-miR-518a-3p mature miRNA
Sequence	53 - GAAAGCGCUUCCCUUUGGAGUG - 74
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64