miRBase entry: ppy-mir-518f-2

Stem-loop ppy-mir-518f-2

Accession

MI0015011

Description

Pongo pygmaeus ppy-mir-518f-2 precursor miRNA

Sequence

ucucaggcugugacccucuagagggaagcacuuucucuugucuaaaagaaaaGAAAGCGCUUCUCUUUAGAGGauuacucuuugaga
(((((((..((((.(((((((((((((((.(((((((((......))))...))))).))))))))))))))).))))..)))))))

Structure

       cu    c               a     ---    gu 
ucucagg  guga ccucuagagggaagc cuuuc   ucuu  c
|||||||  |||| ||||||||||||||| |||||   ||||   
agaguuu  cauu GGAGAUUUCUCUUCG GAAAG   agaa  u
       cu    a               C     aaa    aa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chr19: 55480152-55480238 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from ppy-mir-518f-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-518f

Accession	MIMAT0015957
Description	Pongo pygmaeus ppy-miR-518f mature miRNA
Sequence	53 - GAAAGCGCUUCUCUUUAGAGG - 73
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64