miRBase entry: ppy-mir-518f-1

Stem-loop ppy-mir-518f-1

Accession

MI0015012

Description

Pongo pygmaeus ppy-mir-518f-1 precursor miRNA

Sequence

ucucaugcugugacccucuagagggaagcacuuucucuugucuaaaagaaaaGAAAGCGCUUCUCUUUAGAGGauuacucuuugaga
(((((....((((.(((((((((((((((.(((((((((......))))...))))).))))))))))))))).))))....)))))

Structure

     ugcu    c               a     ---    gu 
ucuca    guga ccucuagagggaagc cuuuc   ucuu  c
|||||    |||| ||||||||||||||| |||||   ||||   
agagu    cauu GGAGAUUUCUCUUCG GAAAG   agaa  u
     uucu    a               C     aaa    aa

Annotation confidence Not enough data

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Genome context

chr19: 55475773-55475859 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from ppy-mir-518f-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-518f

Accession	MIMAT0015957
Description	Pongo pygmaeus ppy-miR-518f mature miRNA
Sequence	53 - GAAAGCGCUUCUCUUUAGAGG - 73
Evidence	not_experimental

Mature ppy-miR-518f

Accession	MIMAT0015958
Description	Pongo pygmaeus ppy-miR-518f mature miRNA
Sequence	53 - GAAAGCGCUUCUCUUUAGAGG - 73
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64