miRBase entry: ppy-mir-519a

Stem-loop ppy-mir-519a

Accession

MI0015014

Description

Pongo pygmaeus ppy-mir-519a precursor miRNA

Sequence

aggcugugacccucuacagggaagcacuuucuguugucugaaagaaaggAAAGUGCAUCCUUUUAGAGUGUgacuguuugaga
((((.((.((.(((((.(((((.(((((((((....(((...)))..))))))))).))))).))))).)).)).))))....

Structure

----    u  g  c     c     a         guug   g 
    aggc gu ac cucua aggga gcacuuucu    ucu  
    |||| || || ||||| ||||| |||||||||    ||| a
    uuug ca UG GAGAU UUCCU CGUGAAAgg    aga  
agag    u  g  U     U     A         --aa   a

Annotation confidence Not enough data

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Genome context

chr19: 55542821-55542903 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppy-mir-519a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-519a

Accession	MIMAT0015960
Description	Pongo pygmaeus ppy-miR-519a mature miRNA
Sequence	50 - AAAGUGCAUCCUUUUAGAGUGU - 71
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64