miRBase entry: ppy-mir-520a

Stem-loop ppy-mir-520a

Accession

MI0015019

Description

Pongo pygmaeus ppy-mir-520a precursor miRNA

Sequence

cucaggcugugaccCUCCAGAGGGAAGUACUUUCUguugucugagagaaaagAAAGUGCUUCCCUUUGGACUGUuucgguu
....(((((.(((..((((((((((((((((((((.((.((...)).)).))))))))))))))))))))..))).)))))

Structure

cuca     u   cC                    g  g  u 
    ggcug gac  UCCAGAGGGAAGUACUUUCU uu uc  
    ||||| |||  |||||||||||||||||||| || || g
    uuggc uUG  AGGUUUCCCUUCGUGAAAga aa ag  
----     u   UC                    a  g  a

Annotation confidence Not enough data

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Genome context

chr19: 55466122-55466202 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from ppy-mir-520a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-520a-5p

Accession	MIMAT0015966
Description	Pongo pygmaeus ppy-miR-520a-5p mature miRNA
Sequence	15 - CUCCAGAGGGAAGUACUUUCU - 35
Evidence	not_experimental

Mature ppy-miR-520a-3p

Accession	MIMAT0015967
Description	Pongo pygmaeus ppy-miR-520a-3p mature miRNA
Sequence	53 - AAAGUGCUUCCCUUUGGACUGU - 74
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64