miRBase entry: ppy-mir-520c

Stem-loop ppy-mir-520c

Accession

MI0015021

Description

Pongo pygmaeus ppy-mir-520c precursor miRNA

Sequence

ucucaggcugugaucCUCUGGAAGGAAGCACUUUCUGuugucugaaagaaaagAAAGUGCUUCCUUUUAGAGGGUuaccguuugaga
((((((((.(((((((((((((((((((((((((((....(((...)))..))))))))))))))))))))))))))).))))))))

Structure

        u                           Guug   g 
ucucaggc gugaucCUCUGGAAGGAAGCACUUUCU    ucu  
|||||||| |||||||||||||||||||||||||||    ||| a
agaguuug cauUGGGAGAUUUUCCUUCGUGAAAga    aga  
        c                           --aa   a

Annotation confidence Not enough data

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Genome context

chr19: 55481357-55481443 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from ppy-mir-520c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-520c-5p

Accession	MIMAT0015969
Description	Pongo pygmaeus ppy-miR-520c-5p mature miRNA
Sequence	16 - CUCUGGAAGGAAGCACUUUCUG - 37
Evidence	not_experimental

Mature ppy-miR-520c-3p

Accession	MIMAT0015970
Description	Pongo pygmaeus ppy-miR-520c-3p mature miRNA
Sequence	54 - AAAGUGCUUCCUUUUAGAGGGU - 75
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64