miRBase entry: ppy-mir-628

Stem-loop ppy-mir-628


Accession
MI0015110
Description
Pongo pygmaeus ppy-mir-628 precursor miRNA


Sequence

auagcuguugugucacuuccucAUGCUGACAUAUUUACUAGAGGguaaaauuaauaaccuUCUAGUAAGAGUGGCAGUCGAagggaagggcucau
........((.(((.((((((...((((.(((.(((((((((((((..........))))))))))))).))).))))....))))))))).)).

Structure
auagcugu  u   a      -cAU    A   A             aaaa 
        ug guc cuuccu    GCUG CAU UUUACUAGAGGgu    u
        || ||| ||||||    |||| ||| |||||||||||||     
        ac cgg gaaggg    UGAC GUG GAAUGAUCUucca    u
-------u  u   -      aAGC    G   A             auaa 


Annotation confidence Not enough data
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Genome context
chr15: 52160692-52160786 [-]

Database links

Mature ppy-miR-628-5p

Accession MIMAT0016067
Description Pongo pygmaeus ppy-miR-628-5p mature miRNA
Sequence 23 - AUGCUGACAUAUUUACUAGAGG - 44
Evidence not_experimental

Mature ppy-miR-628-3p

Accession MIMAT0016068
Description Pongo pygmaeus ppy-miR-628-3p mature miRNA
Sequence 61 - UCUAGUAAGAGUGGCAGUCGA - 81
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64