miRBase entry: ppy-mir-888

Stem-loop ppy-mir-888

Accession

MI0015158

Description

Pongo pygmaeus ppy-mir-888 precursor miRNA

Sequence

ggcagugcucUACUCAAAAAGCUGUGAGUCAcuuagauuacaugugacugacaccucuuugggugaaggaaggcuca
(((..(.((.((((((((.((.(((.((((((...........)))))).))).)).)))))))).)).)..)))..

Structure

--   ag g  c        A  C   G      uuag 
  ggc  u cu UACUCAAA AG UGU AGUCAc    a
  |||  | || |||||||| || ||| ||||||    u
  ucg  a ga guggguuu uc aca ucagug    u
ac   ga g  a        c  c   g      uaca

Annotation confidence Not enough data

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Genome context

chrX: 145868681-145868757 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppy-mir-888

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-888

Accession	MIMAT0016123
Description	Pongo pygmaeus ppy-miR-888 mature miRNA
Sequence	11 - UACUCAAAAAGCUGUGAGUCA - 31
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64